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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58635387_58636223_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58635387 - 58636223
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATATTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATAT
Flanking Amino Acid:
VPTVFIEPRKSSRAKRSPKQ
Intron Amino Acid Position:
1560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
77.1
35.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
68.6
0.42
1.1
72.7
35.9
Minor 5ss
33.8
-1.8
4
54.5
49.7
Minor BPS
57.5
0.31
1.9
81.54
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047730
58513977 - 58649849
135873
ENSAPLT00000031652
58513977 - 58649849
135873
ENSAPLT00000021784
58513977 - 58649743
135767
ENSAPLT00000005795
58546786 - 58649849
103064