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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58636369_58638009_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58636369 - 58638009
Intron Length:
1641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATGTATG
5'SS Class:
major
3'SS Sequence:
CTGTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
TTGCCCTTCACC
Flanking Amino Acid:
PPGVNNSAYISDPDLPPDPQ
Intron Amino Acid Position:
1609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
69.2
41
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
84.5
0.78
0.8
77
37.3
Minor 5ss
48
-0.2
2.5
65.5
39.9
Minor BPS
66.7
0.51
1.8
75.81
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031652
58513977 - 58649849
135873
ENSAPLT00000021784
58513977 - 58649743
135767
ENSAPLT00000005795
58546786 - 58649849
103064
ENSAPLT00000047730
58513977 - 58649849
135873