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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58638244_58639244_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58638244 - 58639244
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAACAAC
5'SS Class:
major
3'SS Sequence:
ACTCTTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGATTTTAATT
Flanking Amino Acid:
TPPGVSAGQPRYVEFGMTPP
Intron Amino Acid Position:
1687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66
39.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.9
0.52
1
68.6
36.7
Minor 5ss
39.5
-1.2
3
52.3
44.8
Minor BPS
69.4
0.69
1.2
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031652
58513977 - 58649849
135873
ENSAPLT00000021784
58513977 - 58649743
135767
ENSAPLT00000005795
58546786 - 58649849
103064
ENSAPLT00000047730
58513977 - 58649849
135873