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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58643898_58649594_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58643898 - 58649594
Intron Length:
5697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTTC
5'SS Class:
major
3'SS Sequence:
TACCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTCAGAAAG
Flanking Amino Acid:
ARPRPVGSTADAYAWTPRIF
Intron Amino Acid Position:
1784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.7
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.2
0.77
0.8
76.4
37.3
Minor 5ss
46.7
-0.3
3.2
67.5
43.9
Minor BPS
48.1
-0.2
1.9
59.58
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021784
58513977 - 58649743
135767