About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58645795_58649594_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58645795 - 58649594
Intron Length:
3800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TACCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTCAGAAAG
Flanking Amino Acid:
GEDEYARRDATHMHGHQEYS
Intron Amino Acid Position:
1805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.2
0.77
0.8
76.4
37.3
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
48.1
-0.2
1.9
59.58
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047730
58513977 - 58649849
135873
ENSAPLT00000031652
58513977 - 58649849
135873
ENSAPLT00000005795
58546786 - 58649849
103064