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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58671361_58671835_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58671361 - 58671835
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
AGGTGCTCAACC
Flanking Amino Acid:
GELGLVQFRDLNGNVNSFQR
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
70
0.5
1
59.6
38.6
Major PPT
78.1
0.63
0.8
76.1
32.5
Minor 5ss
34.4
-1.8
2.9
47
41.7
Minor BPS
50.4
-0
2
61.96
43.2

Associated Gene:

Gene:
ATP6V0A4
Ensembl Gene ID:
ENSAPLG00000004825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005045
58671152 - 58695541
24390