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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58672849_58673880_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
58672849 - 58673880
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGAAT
5'SS Class:
major
3'SS Sequence:
GGATCCTAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
GGATCCTAAACA
Flanking Amino Acid:
PLPREMIDMETVLEKLEAEL
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
72.2
39
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
57.7
0.17
1.1
51.5
41.7
Minor 5ss
32.2
-2
3.5
47.9
47.8
Minor BPS
64.5
0.45
1.7
70.18
41.5

Associated Gene:

Gene:
ATP6V0A4
Ensembl Gene ID:
ENSAPLG00000004825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005045
58671152 - 58695541
24390