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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58674533_58675162_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58674533 - 58675162
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGCGTACT
5'SS Class:
major
3'SS Sequence:
TAACTCTGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATCTTTTAACT
Flanking Amino Acid:
RSTPAAAAKLGFTAGVIKRE
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
71.6
40
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
67.8
0.4
1
65.7
40.4
Minor 5ss
31.4
-2.1
2.9
34.8
41.1
Minor BPS
76.3
0.9
1.1
86.25
33

Associated Gene:

Gene:
ATP6V0A4
Ensembl Gene ID:
ENSAPLG00000004825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005045
58671152 - 58695541
24390