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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58682757_58682918_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58682757 - 58682918
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTTAC
U12 Branch Point Sequence:
GTTTGGTTACCA
Flanking Amino Acid:
SLLAQKSTNEIWNTFFSGRY
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
56.3
0.16
1.3
49.1
46
Major PPT
80
0.68
0.7
73.6
24.6
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
46.6
-0.2
2.6
67.6
44.9

Associated Gene:

Gene:
ATP6V0A4
Ensembl Gene ID:
ENSAPLG00000004825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005045
58671152 - 58695541
24390