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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58683077_58683541_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58683077 - 58683541
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
GGTTATTTCACT
Flanking Amino Acid:
VIPMFKNNTWNKDVLLENTE
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
73.6
37.1
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
34.7
-1.7
3.2
43.8
38
Minor BPS
54.3
0.22
2
74.47
42.1

Associated Gene:

Gene:
ATP6V0A4
Ensembl Gene ID:
ENSAPLG00000004825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005045
58671152 - 58695541
24390