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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58685128_58686005_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58685128 - 58686005
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTTCTTATTC
Flanking Amino Acid:
FGVILSLFNHIYFKKYMNII
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.7
41.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.5
0.87
0.7
81.2
36.2
Minor 5ss
40.3
-1.1
3.1
54.9
42.3
Minor BPS
65.7
0.47
1.6
73.26
38.6

Associated Gene:

Gene:
ATP6V0A4
Ensembl Gene ID:
ENSAPLG00000004825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005045
58671152 - 58695541
24390