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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58686223_58687825_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58686223 - 58687825
Intron Length:
1603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
AGAGTGACATTT
Flanking Amino Acid:
DSNAPLYTHQKEVQSFLVIF
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
82.9
0.74
0.7
81.7
30.3
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
30
-1.4
2
40.49
35

Associated Gene:

Gene:
ATP6V0A4
Ensembl Gene ID:
ENSAPLG00000004825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005045
58671152 - 58695541
24390