About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58690958_58692966_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58690958 - 58692966
Intron Length:
2009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTGCTCAGAATT
Flanking Amino Acid:
RLWALSLAHAQLSEVLWTMV
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
71.9
33.8
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
28.9
-2.4
3.1
33.6
35
Minor BPS
49.7
0.06
1.7
71.03
39.9

Associated Gene:

Gene:
ATP6V0A4
Ensembl Gene ID:
ENSAPLG00000004825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005045
58671152 - 58695541
24390