Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58701656_58702044_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58701656 - 58702044

Intron Length:

389

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

CAATTCCCCGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCAAT

U12 Branch Point Sequence:

TGTCTTCCAATT

Flanking Amino Acid:

HDWQVALVTTMVFFGYMVFS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

72.2

Major BPS

71.8

0.54

1.2

32.5

Major PPT

65.1

0.34

0.8

59.1

32.2

Minor 5ss

-2.5

3.1

35.2

41.4

Minor BPS

46.8

-0.1

1.8

66.81

Associated Gene:

Gene:

SVOPL

Ensembl Gene ID:

ENSAPLG00000004468

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004593

58699825 - 58712308

12484