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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58702117_58702355_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58702117 - 58702355
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TGACCCTGATTT
Flanking Amino Acid:
LLADRYGRWKILLLSFLWGA
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
79.8
0.67
0.8
73.5
31.4
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
50.5
0.09
1.7
68.56
41.8

Associated Gene:

Gene:
SVOPL
Ensembl Gene ID:
ENSAPLG00000004468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004593
58699825 - 58712308
12484