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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58706112_58707162_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58706112 - 58707162
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TACTATTTAATT
Flanking Amino Acid:
PEGVLQEPPKERRGRFKDLI
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.7
0.44
1.1
69.2
40.3
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
66.8
0.61
1.4
77.77
39

Associated Gene:

Gene:
SVOPL
Ensembl Gene ID:
ENSAPLG00000004468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004593
58699825 - 58712308
12484