Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58709204_58709332_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

58709204 - 58709332

Intron Length:

129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAACCTCC

5'SS Class:

weak_major

3'SS Sequence:

TTTCTGTCTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGAGCAT

U12 Branch Point Sequence:

TCACCGAGCATT

Flanking Amino Acid:

MIISTAGEIALNPVNILGIN

Intron Amino Acid Position:

356

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.7

0.21

1.5

57.6

42.8

Major BPS

44.4

-0.3

1.5

49.1

44.8

Major PPT

85.2

0.79

0.8

77.2

37.1

Minor 5ss

57.2

0.24

2.3

68.1

35.9

Minor BPS

34.8

-1.1

2.4

51.94

42.6

Associated Gene:

Gene:

SVOPL

Ensembl Gene ID:

ENSAPLG00000004468

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004593

58699825 - 58712308

12484