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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58709445_58710124_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58709445 - 58710124
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCGCC
5'SS Class:
major
3'SS Sequence:
GCTTCCCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GTGACACTAACT
Flanking Amino Acid:
FFLLLNICTSSAGMTGFLFM
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
59.3
41.3
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
73.9
0.54
0.8
70.6
30.5
Minor 5ss
36.3
-1.6
3.5
50.9
45.8
Minor BPS
49.8
0.07
2
72.09
43.8

Associated Gene:

Gene:
SVOPL
Ensembl Gene ID:
ENSAPLG00000004468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004593
58699825 - 58712308
12484