Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58710207_58711694_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58710207 - 58711694

Intron Length:

1488

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TGGCCTGGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

GTCACGTTAATC

Flanking Amino Acid:

FNTIYIYTAEVYPTTMRALG

Intron Amino Acid Position:

421

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

71.4

40.3

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

60.5

0.24

57.9

43.1

Minor 5ss

-2.3

3.1

41.6

Minor BPS

52.1

0.05

2.1

63.57

42.3

Associated Gene:

Gene:

SVOPL

Ensembl Gene ID:

ENSAPLG00000004468

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004593

58699825 - 58712308

12484