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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58718345_58719420_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58718345 - 58719420
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCACCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGTTGTTAATT
Flanking Amino Acid:
IFQNCAEFNEPDSEVADAGM
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
66.5
0.37
1
59.9
35.9
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
59.7
0.38
2
77.35
39.9

Associated Gene:

Gene:
TRIM24
Ensembl Gene ID:
ENSAPLG00000003731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003858
58718135 - 58777934
59800