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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58721877_58724531_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58721877 - 58724531
Intron Length:
2655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTGTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACGTAT
U12 Branch Point Sequence:
TTTTTTCTGTCT
Flanking Amino Acid:
CHVPSLMNFPSGEWICTFCR
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.8
38.5
Major BPS
49.9
-0
1.3
49.4
37.6
Major PPT
75.9
0.58
0.9
73.5
37.1
Minor 5ss
44.9
-0.5
2.6
59.7
44.8
Minor BPS
42.4
-0.5
3.6
78.88
37.7

Associated Gene:

Gene:
TRIM24
Ensembl Gene ID:
ENSAPLG00000003731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003858
58718135 - 58777934
59800