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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58724846_58725409_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58724846 - 58725409
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GCTTCTTTTACT
Flanking Amino Acid:
ETEEESRPRNTTFSRSILTS
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.8
28.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
88.9
0.88
0.6
83.5
24.9
Minor 5ss
43.9
-0.7
3.1
60.9
43.8
Minor BPS
68.4
0.66
1.6
80.6
41.3

Associated Gene:

Gene:
TRIM24
Ensembl Gene ID:
ENSAPLG00000003731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003858
58718135 - 58777934
59800