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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58728083_58729930_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58728083 - 58729930
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
CCAAAACTAACT
Flanking Amino Acid:
SSYNLPSLPDIDCSGNITLD
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
79.9
0.67
0.8
77.6
31.2
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
42.3
-0.5
2
56.84
44.6

Associated Gene:

Gene:
TRIM24
Ensembl Gene ID:
ENSAPLG00000003731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003858
58718135 - 58777934
59800