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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58736677_58739377_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58736677 - 58739377
Intron Length:
2701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAGTTA
5'SS Class:
major
3'SS Sequence:
ATTCTTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTCTTATTC
Flanking Amino Acid:
STALLYSKRLITYRLRYLLR
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
70.8
35.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.7
0.65
0.8
71.1
39
Minor 5ss
39.8
-1.1
3.4
52
47
Minor BPS
66.8
0.51
1.5
74.6
36.3

Associated Gene:

Gene:
TRIM24
Ensembl Gene ID:
ENSAPLG00000003731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003858
58718135 - 58777934
59800