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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58739525_58740145_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58739525 - 58740145
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TGGACTGGAAAT
Flanking Amino Acid:
KGKALLHQLETLAKEHRMKL
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
89.1
0.88
0.7
84.2
30.7
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
42.7
-0.4
2.1
59.63
43.4

Associated Gene:

Gene:
TRIM24
Ensembl Gene ID:
ENSAPLG00000003731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003858
58718135 - 58777934
59800