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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58740261_58741945_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58740261 - 58741945
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATTTTCTATACT
Flanking Amino Acid:
IKYTGKQIQNRILEVNQNQK
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
84.1
0.77
0.8
78.1
35.3
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
59.3
0.37
2
81.73
39.7

Associated Gene:

Gene:
TRIM24
Ensembl Gene ID:
ENSAPLG00000003731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003858
58718135 - 58777934
59800