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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58743485_58744982_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58743485 - 58744982
Intron Length:
1498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCACAC
5'SS Class:
major
3'SS Sequence:
CTTTATTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTTTCTTTATT
Flanking Amino Acid:
TVRQKEEVSPEAVGVTSQRP
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.2
56.9
42.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.9
0.63
0.9
73.7
35.4
Minor 5ss
36.4
-1.5
3.4
50.3
46.3
Minor BPS
69
0.68
1.6
83.03
38.5

Associated Gene:

Gene:
TRIM24
Ensembl Gene ID:
ENSAPLG00000003731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003858
58718135 - 58777934
59800