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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58798076_58805873_R

Intron Information:

Intron Rank:
137828
Intron Class:
major
Intron Phase:
Intron Coordinates:
58798076 - 58805873
Intron Length:
7798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAG
U12 Branch Point Sequence:
TTTCTAGTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
49.9
-0
1.7
58.5
47.9
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
43.7
-0.4
2.3
69.73
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021658
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033844
58795072 - 58814374
19303
ENSAPLT00000020462
58795072 - 58814374
19303