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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58915007_58919584_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58915007 - 58919584
Intron Length:
4578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGAAAA
U12 Branch Point Sequence:
TGGCACCAAAGA
Flanking Amino Acid:
KREDIFYCGKLWNTCHPPEL
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
46.6
-0.2
1
49
32
Major PPT
78.2
0.63
0.8
69.9
36.6
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
38
-0.9
2.1
47.33
42.1

Associated Gene:

Gene:
AKR1D1
Ensembl Gene ID:
ENSAPLG00000002867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002944
58894521 - 58933335
38815
ENSAPLT00000036162
58894521 - 58933335
38815