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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5892343_5972885_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5892343 - 5972885
Intron Length:
80543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCTC
5'SS Class:
major
3'SS Sequence:
TTTCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
CACCACTTAAAA
Flanking Amino Acid:
MGAFSEVVLA
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.3
36.2
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
90.7
0.92
0.6
89.3
19.6
Minor 5ss
35.8
-1.6
3.1
49.2
40.2
Minor BPS
49.8
-0
1.7
56.55
41.9

Associated Gene:

Gene:
CAMK1D
Ensembl Gene ID:
ENSAPLG00000005323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005499
5892341 - 6093404
201064