About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58925306_58927041_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58925306 - 58927041
Intron Length:
1736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCG
5'SS Class:
major
3'SS Sequence:
CTTACTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATTAATC
Flanking Amino Acid:
GLKHKPVSNQVECHPYFTQP
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
59.6
44.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.8
0.65
0.8
73.5
31.3
Minor 5ss
37.2
-1.5
3.2
47.9
47.8
Minor BPS
58.6
0.25
2
72.8
38.2

Associated Gene:

Gene:
AKR1D1
Ensembl Gene ID:
ENSAPLG00000002867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036162
58894521 - 58933335
38815
ENSAPLT00000002944
58894521 - 58933335
38815