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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58927932_58928572_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58927932 - 58928572
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTACTCCTAACT
Flanking Amino Acid:
FFSPSLHGTKIFDFSLTDEE
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
70.7
0.47
0.8
70.6
28.9
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
65.2
0.55
1.7
83.18
37.1

Associated Gene:

Gene:
AKR1D1
Ensembl Gene ID:
ENSAPLG00000002867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036162
58894521 - 58933335
38815