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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58958760_58961878_R

Intron Information:

Intron Rank:
151876
Intron Class:
major
Intron Phase:
Intron Coordinates:
58958760 - 58961878
Intron Length:
3119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATAAC
5'SS Class:
major
3'SS Sequence:
ATATTTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ATATACTAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
76.4
32.3
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
78.1
0.63
0.8
70.9
40.2
Minor 5ss
41.5
-0.9
2.7
53.5
43.9
Minor BPS
55.8
0.18
1.8
67.72
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029260
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034942
58957998 - 58962025
4028