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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58986228_58987105_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58986228 - 58987105
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
QMSNRCRSLLYYVTQKLQLL
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.5
0.84
0.6
85.4
22
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017163
58985630 - 59002561
16932