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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58987281_58990162_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58987281 - 58990162
Intron Length:
2882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACAT
5'SS Class:
major
3'SS Sequence:
TTCTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAG
U12 Branch Point Sequence:
TTTGCCTGAGCA
Flanking Amino Acid:
RHPELQSPFKVPLFIPVSFT
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
71.6
40.1
Major BPS
49.6
-0
1.6
59.7
46.7
Major PPT
86.6
0.82
0.7
80.5
31.5
Minor 5ss
39.2
-1.2
3.2
56.5
47.6
Minor BPS
61
0.34
1.8
76.45
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017163
58985630 - 59002561
16932