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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58990313_58990952_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58990313 - 58990952
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCACAATGCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATCTTCACA
Flanking Amino Acid:
HTPLPAVMLMFPLVTTMVCI
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
65.8
40
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
61.4
0.26
1
58
41.7
Minor 5ss
28.7
-2.4
3.5
34.8
43.6
Minor BPS
59.4
0.29
1.8
71.25
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017163
58985630 - 59002561
16932