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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58991050_58992829_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58991050 - 58992829
Intron Length:
1780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGATCT
5'SS Class:
major
3'SS Sequence:
TGTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGCTGATGCATA
Flanking Amino Acid:
TMNGGILTFSRTLFVASREG
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.3
75.1
35.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
83.9
0.76
0.8
77.1
37.1
Minor 5ss
36
-1.6
3
49.2
46.5
Minor BPS
38.3
-0.9
2.3
49.76
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017163
58985630 - 59002561
16932