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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58992934_58993249_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58992934 - 58993249
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAC
U12 Branch Point Sequence:
TGTTTCTGCAGT
Flanking Amino Acid:
DVLASPAVAVSFVQRACRSL
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.5
41.3
Major BPS
54.8
0.12
1.2
58.7
38.1
Major PPT
77.8
0.63
0.8
69.5
36.8
Minor 5ss
30.6
-2.2
2.9
38.2
41.8
Minor BPS
48.2
-0
2.2
72.98
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017163
58985630 - 59002561
16932