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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58993374_58993572_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58993374 - 58993572
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
CCCTTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AGCTTGTTCATT
Flanking Amino Acid:
FVREELVRPERNIPLAVIVS
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.6
0.69
0.7
76.2
25.9
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
44.4
-0.3
2.3
61.81
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017163
58985630 - 59002561
16932