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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58993618_58993704_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58993618 - 58993704
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
CCCCGCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCGAC
U12 Branch Point Sequence:
CCTGGCTCGACC
Flanking Amino Acid:
FYAGMFAYSGWFQTSFVREE
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.2
Major BPS
43.5
-0.4
1.4
37.8
41.4
Major PPT
66.6
0.37
1
60
35.4
Minor 5ss
35
-1.7
3.5
45
44.5
Minor BPS
44.7
-0.4
2.1
53.26
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017163
58985630 - 59002561
16932