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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58996628_58997341_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58996628 - 58997341
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGGACCAAAATT
Flanking Amino Acid:
LFLWAEFFAIRPANSAVVSL
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
71.8
0.49
0.9
65.5
36.1
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
47.7
-0.1
2
66.42
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017163
58985630 - 59002561
16932