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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58997469_58999346_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58997469 - 58999346
Intron Length:
1878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGAACTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TATACCTGAACT
Flanking Amino Acid:
WFACGLLSMFGALCYAELGT
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
75.1
0.56
1
65.7
45
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
74.4
0.84
1.4
87.67
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017163
58985630 - 59002561
16932