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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59050565_59050836_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59050565 - 59050836
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTAAAG
Flanking Amino Acid:
T*SAWSSRTQRCLN*WKYQI
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.5
0.78
0.9
86.4
25.2
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
78.4
0.75
1.3
80.63
34.8

Associated Gene:

Gene:
KDM7A
Ensembl Gene ID:
ENSAPLG00000016389
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031841
59025945 - 59052701
26757
ENSAPLT00000017105
59025945 - 59057736
31792