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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59107764_59109469_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59107764 - 59109469
Intron Length:
1706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTCAT
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
TGSIGAAVGQYLVSLIQENL
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
59.3
0.23
1.4
63.4
44.3
Major PPT
89.3
0.88
0.6
88.7
20.6
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
SLC37A3
Ensembl Gene ID:
ENSAPLG00000016319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017033
59106651 - 59125231
18581