About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59109622_59110667_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
59109622 - 59110667

Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACTGTCT

5'SS Class:
major

3'SS Sequence:
TCGGCAATTTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTGTTAT

U12 Branch Point Sequence:
TTCTTTTGCACC

Flanking Amino Acid:
PINAVIMTITGFFIGGPSNM

Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71
0.5
1.1
66.1
40.1

Major BPS
69
0.47
1.2
61.1
45.5

Major PPT
68.1
0.41
1
63.1
42

Minor 5ss
38.4
-1.3
3.5
57.3
46.9

Minor BPS
49.7
-0
1.9
66
40.2

Associated Gene:

Gene:
SLC37A3

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

59106651 - 59125231
18581