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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59110716_59112672_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59110716 - 59112672
Intron Length:
1957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATACTTATCT
Flanking Amino Acid:
FAVGSLFGYSRSPNSKPINA
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.3
69.1
43.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.6
0.89
0.6
85
22.5
Minor 5ss
35.8
-1.6
2.9
47
41.7
Minor BPS
67.9
0.64
1.8
86.26
39.2

Associated Gene:

Gene:
SLC37A3
Ensembl Gene ID:
ENSAPLG00000016319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017033
59106651 - 59125231
18581