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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59112775_59114008_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59112775 - 59114008
Intron Length:
1234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
GCATCCTAAGCC
Flanking Amino Acid:
SIWYDVGGIVGGTIQGLISD
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
88.5
0.87
0.7
85.2
29.1
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
49.8
-0
1.9
59.94
44.9

Associated Gene:

Gene:
SLC37A3
Ensembl Gene ID:
ENSAPLG00000016319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017033
59106651 - 59125231
18581