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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59114151_59116496_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59114151 - 59116496
Intron Length:
2346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
CTCTTTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CAAGTGCTAACT
Flanking Amino Acid:
QACCLPGVILYSLAYACLKL
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
70.1
35.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
83.6
0.75
0.8
75.9
38
Minor 5ss
27.2
-2.6
2.9
28.8
37
Minor BPS
42.1
-0.5
2.3
57.88
44.8

Associated Gene:

Gene:
SLC37A3
Ensembl Gene ID:
ENSAPLG00000016319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017033
59106651 - 59125231
18581