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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59116679_59117745_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59116679 - 59117745
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTACCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCATAT
U12 Branch Point Sequence:
TGTTGCATATCC
Flanking Amino Acid:
FGLLTSPKEVGLPELGADDE
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
59
0.23
1.2
55
42.7
Major PPT
69.7
0.44
0.9
66.4
39.5
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
48.3
-0.1
2.2
68.19
43

Associated Gene:

Gene:
SLC37A3
Ensembl Gene ID:
ENSAPLG00000016319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017033
59106651 - 59125231
18581