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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59119038_59119628_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59119038 - 59119628
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CTTTTCCAAATT
Flanking Amino Acid:
AVMGNWFGKAGRGFVFGLWS
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
38.1
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
85.6
0.8
0.8
80.7
31.4
Minor 5ss
39.1
-1.2
2.8
40.9
45.4
Minor BPS
52.3
0.15
2
75.59
41.9

Associated Gene:

Gene:
SLC37A3
Ensembl Gene ID:
ENSAPLG00000016319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017033
59106651 - 59125231
18581